Review



slide seq v2  (TaKaRa)


Bioz Verified Symbol TaKaRa is a verified supplier
Bioz Manufacturer Symbol TaKaRa manufactures this product  
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 95
      Buy from Supplier

    Structured Review

    TaKaRa slide seq v2
    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Slide Seq V2, supplied by TaKaRa, used in various techniques. Bioz Stars score: 95/100, based on 163 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/slide-seq+v2/Seeker+Spatial+Transcriptomics+Kit/pmc12802643-20-0-3
    Average 95 stars, based on 163 article reviews
    slide seq v2 - by Bioz Stars, 2026-10
    95/100 stars

    Images

    1) Product Images from "A cell and transcriptome atlas of human arterial vasculature"

    Article Title: A cell and transcriptome atlas of human arterial vasculature

    Journal: Cell Genomics

    doi: 10.1016/j.xgen.2025.101034

    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP (left), slide-seq spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Figure Legend Snippet: Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP (left), slide-seq spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .

    Techniques Used: Marker, RNA Expression, RNA Sequencing, RNAscope, Expressing, Quantitative Proteomics

    Related Articles

    In Situ:

    Article Title: Clonal lineage tracing and transcriptomics of cortical progenitor populations reveal maintenance of differentiation potential
    Article Snippet: 20 j 102418 j March 11, 2025 7 data show that markers of intermediary clusters in the pbacBarcode datamap to specific populations of V-SVZ cells in vivo and likely label postnatal IPCs. .. P4 pbacBarcode populations mapped into a spatial context using scSpatialseq To place the pbacBarcode data into the in situ context of the early postnatal cortex, we turned to the Curio Seeker Slide-seq V2 method (Rodriques et al., 2019; Stickels et al., 2021) (Figures 4A–4F), which produces near single-cell spatial sequencing (scSpatialseq). ..

    Sequencing:

    Article Title: Clonal lineage tracing and transcriptomics of cortical progenitor populations reveal maintenance of differentiation potential
    Article Snippet: 20 j 102418 j March 11, 2025 7 data show that markers of intermediary clusters in the pbacBarcode datamap to specific populations of V-SVZ cells in vivo and likely label postnatal IPCs. .. P4 pbacBarcode populations mapped into a spatial context using scSpatialseq To place the pbacBarcode data into the in situ context of the early postnatal cortex, we turned to the Curio Seeker Slide-seq V2 method (Rodriques et al., 2019; Stickels et al., 2021) (Figures 4A–4F), which produces near single-cell spatial sequencing (scSpatialseq). ..

    Spatial Transcriptomics:

    Article Title: Systematic comparison of sequencing-based spatial transcriptomic methods.
    Article Snippet: .. Benchmarking reference tissues and experimental design We systematically benchmarked spatial transcriptomics (sST) methods based on distinct spatial indexing strategies, encompassing microarray (probe-based and polyA-based 10X Genomics Visium13, DynaSpatial14), bead-based approaches (HDST15, BMKMANU S1000, Slide-seq V2 (ref. 16), Curio Seeker (which is the commercialized version of Slide-seq at Curio Bioscience), Slide-tag17), polony- or nanoball-based technologies (Stereo-seq18, PIXEL-seq19, Salus) and microfluidics (DBiT-seq20). ..

    Microarray:

    Article Title: Systematic comparison of sequencing-based spatial transcriptomic methods.
    Article Snippet: .. Benchmarking reference tissues and experimental design We systematically benchmarked spatial transcriptomics (sST) methods based on distinct spatial indexing strategies, encompassing microarray (probe-based and polyA-based 10X Genomics Visium13, DynaSpatial14), bead-based approaches (HDST15, BMKMANU S1000, Slide-seq V2 (ref. 16), Curio Seeker (which is the commercialized version of Slide-seq at Curio Bioscience), Slide-tag17), polony- or nanoball-based technologies (Stereo-seq18, PIXEL-seq19, Salus) and microfluidics (DBiT-seq20). ..

    Marker:

    Article Title: Systematic comparison of sequencing-based spatial transcriptomic methods
    Article Snippet: .. Stereo-seqBMKMANU S1000Visium (polyA) Slide-seq V2 snRNA-seq 1 1 Visium (probe) DynaSpatial 0.21 Curio Bio Supplementary Figure 26, a) An overview of cell states compared in the marker gene detection analysis, with lens and melanocytes highlighted. b) Number of marker genes detected with different numbers of reads used for each sST method in the comparison between lens and melanocytes. c) An Upset plot displays the intersection of marker genes obtained by different sST methods using all reads for the lens and melanocytes comparison. ..

    Comparison:

    Article Title: Systematic comparison of sequencing-based spatial transcriptomic methods
    Article Snippet: .. Stereo-seqBMKMANU S1000Visium (polyA) Slide-seq V2 snRNA-seq 1 1 Visium (probe) DynaSpatial 0.21 Curio Bio Supplementary Figure 26, a) An overview of cell states compared in the marker gene detection analysis, with lens and melanocytes highlighted. b) Number of marker genes detected with different numbers of reads used for each sST method in the comparison between lens and melanocytes. c) An Upset plot displays the intersection of marker genes obtained by different sST methods using all reads for the lens and melanocytes comparison. ..

    other:

    Article Title: stPipe: a flexible and streamlined R/Bioconductor pipeline for preprocessing sequencing-based spatial transcriptomics data
    Article Snippet: Curio-seeker is the commercially available version of Slide-seq V2.



    Similar Products

    slide seq v2  (TaKaRa)
    95
    TaKaRa slide seq v2
    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Slide Seq V2, supplied by TaKaRa, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/slide-seq+v2/Seeker+Spatial+Transcriptomics+Kit/pmc12802643-20-0-3
    Average 95 stars, based on 1 article reviews
    slide seq v2 - by Bioz Stars, 2026-10
    95/100 stars
    		  Buy from Supplier
    seeker slide seq v2 method  (TaKaRa)
    95
    TaKaRa seeker slide seq v2 method
    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Seeker Slide Seq V2 Method, supplied by TaKaRa, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/slide-seq+v2/Seeker+Spatial+Transcriptomics+Kit/pmc11960535__mmc3-123-30-29
    Average 95 stars, based on 1 article reviews
    seeker slide seq v2 method - by Bioz Stars, 2026-10
    95/100 stars
    		  Buy from Supplier
    mouse hippocampus slide-seq v2 data  (Broad Institute Inc)
    90
    Broad Institute Inc mouse hippocampus slide-seq v2 data
    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Mouse Hippocampus Slide Seq V2 Data, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/slide-seq+v2/slide+seqv2/pmc11874963__Supplemental_Material_-10-24-33
    Average 90 stars, based on 1 article reviews
    mouse hippocampus slide-seq v2 data - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    stereo seqbmkmanu s1000visium polya slide seq v2 snrna seq  (TaKaRa)
    95
    TaKaRa stereo seqbmkmanu s1000visium polya slide seq v2 snrna seq
    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Stereo Seqbmkmanu S1000visium Polya Slide Seq V2 Snrna Seq, supplied by TaKaRa, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/slide-seq+v2/Seeker+Spatial+Transcriptomics+Kit/pmc11399101__41592_2024_2325_MOESM1_ESM-119-0-12
    Average 95 stars, based on 1 article reviews
    stereo seqbmkmanu s1000visium polya slide seq v2 snrna seq - by Bioz Stars, 2026-10
    95/100 stars
    		  Buy from Supplier
    slide-seq v2  (10X Genomics)
    90
    10X Genomics slide-seq v2
    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Slide Seq V2, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/slide-seq+v2/slide+seq/pm38965443-58-29-24
    Average 90 stars, based on 1 article reviews
    slide-seq v2 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    slide-seq v2  (Broad Institute Inc)
    90
    Broad Institute Inc slide-seq v2
    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Slide Seq V2, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/slide-seq+v2/slide+seqv2/pmc10937399__41588_2024_1664_MOESM2_ESM-21-1-9
    Average 90 stars, based on 1 article reviews
    slide-seq v2 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    slide-seq v2 data  (Broad Institute Inc)
    90
    Broad Institute Inc slide-seq v2 data
    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Slide Seq V2 Data, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/slide-seq+v2/slide+seqv2/pm38217002-591-0-9
    Average 90 stars, based on 1 article reviews
    slide-seq v2 data - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    slide-seq v2  (Spatial Transcriptomics Inc)
    90
    Spatial Transcriptomics Inc slide-seq v2
    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP <t>(left),</t> <t>slide-seq</t> spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .
    Slide Seq V2, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/slide-seq+v2/slide+seqv2/pm37811885-249-29-48
    Average 90 stars, based on 1 article reviews
    slide-seq v2 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP (left), slide-seq spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .

    Journal: Cell Genomics

    Article Title: A cell and transcriptome atlas of human arterial vasculature

    doi: 10.1016/j.xgen.2025.101034

    Figure Lengend Snippet: Adventitial fibroblast in human arteries (A) Featureplot of gene score of ECM- and collagen-related genes demonstrating enrichment in AdvFib. (B) Most specific adventitial (Adv) fibroblast marker, PI16 , RNA expression visualized on the RNA-seq UMAP (left), slide-seq spatial transcriptomics map (middle), and RNAscope (right), confirming the spatial identity of PI16-expressing fibroblasts. (C) UMAP visualization of canonical fibroblast marker genes with diffuse expression pattern, including S100A4 , PDGFRA , COL1A1 , and GLI1 , compared to additional new markers SFRP2 and MFAP5. (D) Relative specificity and sensitivities of commonly used and newly identified “fibroblast markers.” (E) Violin plots showing differential expression of key genes implicated in aneurysm FBN1 , TGFBR2 , LOX , FBLN1 , and MFAP5 expressed mostly in AdvFib. See also and .

    Article Snippet: Slide-Seq V2 , Curio , #CB00030 v3.1.

    Techniques: Marker, RNA Expression, RNA Sequencing, RNAscope, Expressing, Quantitative Proteomics